Papers and important abstracts 論文および重要な抄録
Jun Ohta:
Single-atom tracing in a model network of carbohydrate metabolism and pathway selection
(2018) IPSJ Transactions on Bioinformatics Vol.11, 1-13
doi: 10.2197/ipsjtbio.11.1
Supplemental information
Jun Ohta:
Strategy for Exploring Metabolic Pathways: Generation of Hypothetical Metabolic Network
(2015) J Comput Sci Syst Biol 8(1), 55-58
doi: 10.4172/jcsb.1000171
Supplemental information
Jun Ohta:
Visualization of Metabolic Networks as Networks of Atoms by Pajek: An Application of Connectivity Matrix Method
(2006) Genome Informatics, Volume 17 Poster and Software demonstrations, P146
Please see the abstract at http://www.jsbi.org/pdfs/journal1/GIW06/GIW06P146.pdf
Jun Ohta:
Connectivity matrix method for analyses of biological networks and its application to atom-level analysis of a model network of carbohydrate metabolism
(2006) IEE Proceedings Systems Biology 153(5), 372-374
PMID: 16986320
Supplemental information
Jun Ohta:
Data Format for Computational Analysis of Intermetabolite Atom-level Connectivity in Metabolic Networks
(2003) Molecular & Cellular Proteomics 2(9), 830-30 (Abstract)
Jun Ohta:
A Role of Gamma-Glutamylcysteine Synthetase in Propargylglycine Metabolism
(2003) Molecular & Cellular Proteomics 2(9), 878-78 (Abstract)
K. Tomizawa, J. Ohta, M. Matsushita, A. Moriwaki, S.T. Li, K. Takei, H. Matsui:
Cdk5/p35 regulates neurotransmitter release through phosphorylation and downregulation of P/Q-type voltage-dependent calcium channel activity.
(2002) J Neurosci 22(7), 2590-7.
M. Kinuta, J. Ohta, H. Yamada, K. Kinuta, T. Abe, S.A. Li, A. Otsuka, A. Nakanishi, K. Takei:
Determination of S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]glutathione, a novel metabolite of L-histidine, in tissue extracts from sunlight-irradiated rat by capillary electrophoresis.
(2001) Electrophoresis 22(16), 3365-70
J. Ohta, Y.-H. Kwon, and M. H. Stipanuk:
Cysteine dioxygenase and gamma-glutamylcysteine synthetase activities in primary cultured hepatocytes respond to sulfur amino acid supplementation in a reciprocal manner.
(2000) Amino Acids 19(3-4), 705-728.
N. Nagamine, J. Ohta, N. Masuoka, H. Kodama, and T. Ubuka:
Formation of gamma-glutamylpropargylglycylglycine from propargylglycine in human blood and erythrocytes.
(1999) Acta Medica Okayama 53(1), 19-25
Y. Shimazaki, J. Zhang, H. Wakiguchi, T. Kurashige, Y. Sagara, N. Masuoka, J. Ohta, T. Ubuka, and H. Kodama:
Different effect of diastereoisomers of L-cystathionine sulfoxide on the stimulus coupled responses of human neutrophils.
(1998) Biochemical and Biophysical Research Communications 247, 387-391.
M. Tomozawa, K. Yukihiro, W.-B. Yao, T. Abe, J. Ohta, and T. Ubuka:
Excretion of taurine and sulfate in rats fed with a low protein diet.
(1998) Acta Medica Okayama 52(2), 77-81.
K. Yukihiro, M. Tomozawa, T. Abe, W.-B. Yao, J. Ohta, and T. Ubuka:
Excretion of sulfate and taurine in rats fed with a high protein diet.
(1998) Acta Medica Okayama 52(2), 71-75.
M. Kinuta, H. Shimizu, N. Masuoka, J. Ohta, W.-B. Yao, and T. Ubuka:
Identification of S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-3-mercaptopyruvic acid with a metabolic intermediate between S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-L-cysteine and S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-3-mercaptolactic acid.
(1997) Amino Acids 13, 163-169.
N. Masuoka, M. Wakimoto, J. Ohta, K. Ishii, and T. Nakano:
Characterization of hydrogen peroxide removal activities in mouse hemolysates: catalase activity and hydrogen peroxide removal activity by hemoglobin.
(1997) Biochim Biophys Acta 1361, 131-137.
J. Ohta, T. Ubuka, H. Kodama, K. Sugahara, N. Nagamine:
A new metabolite of propargylglycine, gamma-glutamylpropargylglycylglycine, in liver of D,L-propargylglycine-administered rats.
(1997) Biochim Biophys Acta 1334, 240-246.
J. Ohta and M. H. Stipanuk:
Taurine production in rat primary hepatocytes.
(1996) pp.69-71, in Advances in experimental medicine and biology Volume 403, Taurine 2: Basic and Clinical Aspects edited by Ryan J. Huxtable, Junichi Azuma, Kinya Kuriyama, Masao Nakagawa, and Akemichi Baba, Plenum Press, New York and London.
M. Nishibori, T. Chikai, M. Kawabata, J. Ohta, T. Ubuka, K. Saeki:
Purification of a novel serpin-like protein from bovine brain.
(1995) Neuroscience Research 24, 47-52.
J. Ohta, T. Ubuka, H. Kodama, K. Sugahara, K. Yao, N. Masuoka, and M. Kinuta:
Increase in cystathionine contentin rat liver mitochondria after D,L-propargylglycine administration.
(1995) Amino Acids 9(2), 111-122.
S. Yamada, T. Abe, J. Ohta, N. Masuoka, and T. Ubuka:
Increase in tissue cysteine level and excretion of sulfate and taurine after intragastric administration of L-2-oxothiazolidine-4-carboxylate in rats.
(1995) Amino Acids 8(1), 37-45.
W.-B. Yao, Y.-Q. Zhao, T. Abe, J. Ohta, and T. Ubuka:
Effect of N-acetylcysteine administration on cysteine and glutathione contents in liver and kidney and in perfused liver of intact and diethyl maleate-treated rats.
(1994) Amino Acids 7(3), 255-266.
N. Masuoka, K. Yao, M. Kinuta, J. Ohta, M. Wakimoto, T. Ubuka:
High-performance liquid chromatographic determination of taurine and hypotaurine.
(1994) J. Chromatogr. B 660(1), 31-35.
T. Teraoka, J. Ohta, T. Abe, H. Inoue, and T. Ubuka:
Inhibition of sulfate-forming activity in rat liver mitochondria by (aminooxy)acetate.
(1993) Amino Acids 5(2), 245-251.
T. Ubuka, J. Ohta, R. Akagi, Y. Hosaki, Y. Ishimoto, S. Kiguchi, T. Ikeda, and K. Ishino:
Metabolism of L-cysteine via transamination pathway (3-mercaptopyruvate pathway).
(1992) Amino Acids 3(3), 243-252.
T. Ubuka, J. Ohta, W.-B. Yao, T. Abe, T. Teraoka, and Y. Kurozumi:
L-Cysteine metabolism via 3-mercaptopyruvate pathway and sulfate formation in rat liver mitochondria.
(1992) Amino Acids 2(1-2), 143-155.
T. Ubuka, J. Ohta, T. Abe, T. Teraoka, W.-B. Yao, and Y.-Q. Zhao:
Chemical S-thiolation of reduced ribonuclease A using S-(2-amino-2-carboxyethylsulfonyl)-L-cysteine (Sacsyl-cysteine): Preparation and characterization of ribonuclease A-cysteine mixed disulfide.
(1992) Physiol. Chem. Phys. and Med. NMR 24(4), 289-305.
T. Ubuka, J. Ohta, N. Masuoka, T. Abe, T. Teraoka, W.-B. Yao, and Y.-Q Zhao:
Chemical S-thiolation of reduced ribonuclease A with glutathione and cysteine.
(1992) Frontiers and new horizons in amino acid research, K. Takai ed. Elsevier Science Publishers B.V., pp.595-598.
K. Sugahara, J. Ohta, M. Takemura, and H. Kodama:
Determination of cystathionine and perhydro-1,4-thiazepine-3,5-dicarboxylic acid in the urine of a patient with cystathionuria using column liquid chromatography-mass spectrometry.
(1992) J. Chromatogr. 579(2) (Biomedical Applications 117(2)), 318-323.
K. Yao, T. Ubuka, N. Masuoka, M. kinuta, J. Ohta, T. Teraoka, and S. Futani:
Assay of sialidase activity using ion-exchange chromatography and acidic ninhydrin reaction.
(1992) J. Chromatogr. 581(1) (Biomedical Applications 119(1)), 11-15.
産賀敏彦、矢尾謙三郎、益岡典芳、絹田正裕、太田潤、姚文彬、阿部匡史：
含硫アミノ酸に関する研究。
(1991) 岡山医学会雑誌 103(3)（岡山大学医学部創立120周年記念 特集号）55-65.
M. Kinuta, K. Yao, N. Masuoka, J. Ohta, T. Teraoka, and T. Ubuka:
Isolation and characterization of 3-[(carboxymethyl)thio]-3-(1H-imidazol-4-yl)propanoic acid from human urine and preparation of its proposed precurcer, S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]cysteine.
(1991) Biochem. J. 275(3), 617-621.
M. Kinuta, N. Masuoka, K. Yao, J. Ohta, S. Yoshida, S. Futani, and T. Ubuka:
S-[2-Carboxy-1-(1H-imidazol-4-yl)ethyl]cysteine in normal human urine.
(1991) Amino acids, 1(2), 259-262.
T. Ubuka, S. Yuasa, J. Ohta, N. Masuoka, K. Yao, and M. Kinuta:
Formation of sulfate from L-cysteine in rat liver mitochondria.
(1990) Acta Med. Okayama, 44(2), 55-64.
T. Ubuka, J. Ohta, R. Akagi, H. Nishina, S. Yoshida, and T. Taguchi:
Changes in glutathione and cysteine levels after 2-oxothiazolidine-4-carboxylate administration in guinea pig tissues.
(1990) Amino acids : Chemistry, Biology and Medicine, G. Lubec and G.A. Rosenthal eds, ESCOM Science Publishers B.V., 951- 955.
K. Yao, T. Ubuka, N. Masuoka, M. Kinuta, J. Ohta, and K. Ishino:
Visualization of sialoglycoproteins in polyacrylamide gels by acidic ninhydrin reaction.
(1990) Acta Med. Okayama, 44(2), 65-70.
J. Ohta and T. Ubuka:
Reduction of 3-mercaptopyruvate in rat liver is catalyzed by lactate dehydrogenase.
(1989) Acta Med. Okayama, 43(2), 89-95.
H. Nishina, J. Ohta, and T. Ubuka:
Effect of L-2-oxothiazolidine-4-carboxylate administration on glutathione and cysteine concentrations in guinea pig liver and kidney.
(1987) Physiol. Chem. Phys. and Med. NMR, 19(1), 9-13.
太田潤、仁科秀雄、産賀敏彦、池田隆浩、石野和志、江尻孝平、赤堀周一郎：
L-2-Oxothiazolidine-4-carboxylic acid 投与によるモルモット組織内含硫化合物の変動
(1986) 含硫アミノ酸、9(2), 315-317.